Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs111375108 | chr7:55980652 | C/T | 1.58E-10 | 407 | 15.2 | 16.23 | 7.8 | KM Plot |
| LGG | rs111380712 | chr9:126950280 | A/C | 1.25E-6 | 407 | 15.37 | 11.1 | 12.92 | KM Plot |
| LGG | rs111480651 | chr14:74374485 | A/G | 1.9E-7 | 404 | 14.73 | 17.2 | 3.93 | KM Plot |
| LGG | rs111593827 | chr5:167753502 | A/G | 4.95E-8 | 398 | 15.93 | 14.7 | 15.7 | KM Plot |
| LGG | rs111630843 | chr9:126950194 | G/A | 1.25E-6 | 407 | 15.37 | 11.1 | 12.92 | KM Plot |
| LGG | rs111647249 | chr22:42822001 | CAG/C | 6.41E-8 | 401 | 15.3 | 16.23 | 4.4 | KM Plot |
| LGG | rs111651187 | chr7:55924895 | G/A | 0 | 404 | 15.25 | 15.93 | 3.77 | KM Plot |
| LGG | rs111676188 | chr7:56057635 | T/C | 1.58E-10 | 406 | 15.32 | 15.93 | 7.8 | KM Plot |
| LGG | rs11168573 | chr12:48838935 | G/T | 1.91E-5 | 392 | 15.05 | 16.3 | 9.5 | KM Plot |
| LGG | rs111767939 | chr7:56026600 | C/A | 1.7E-10 | 404 | 15.3 | 16.08 | 7.8 | KM Plot |
| LGG | rs111772405 | chr5:92906309 | A/AC | 4.3E-5 | 393 | 15.18 | 15.73 | 25.62 | KM Plot |
| LGG | rs11177577 | chr12:69671791 | C/T | 0.000128 | 407 | 15.17 | 14.63 | 18.23 | KM Plot |
| LGG | rs11177599 | chr12:69721970 | G/A | 0.000189 | 401 | 15.13 | 14.77 | 18.23 | KM Plot |
| LGG | rs111805200 | chr16:4945061 | G/T | 3.08E-6 | 404 | 15.25 | 15.33 | 7.8 | KM Plot |
| LGG | rs111839144 | chr17:48514077 | G/T | 1.76E-5 | 406 | 15.17 | 17.67 | 14.12 | KM Plot |